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Microbiology @ SILS
Research groups

Research areas and groups

The Microbiology theme consists of multiple research groups organised into research areas, covering microbial food safety and microbiomes, bacterial physiology and cell biology, microbiome engineering and biomolecular mass spectrometry.

Molecular Biology and Microbial Food Safety (MBMFS)

Cluster led by Prof. Stanley Brul focusing on microbial food safety and microbiomes across hosts, industrial systems and environments, integrating molecular biology with risk assessment and regulation.

Microbial Stress & Food Safety Group

PI: Prof. Dr. Stanley Brul

Fundamental and applied microbiology to understand stress physiology, antibiotic action and resistance emergence.

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Spatial SysBio Lab

PI: Dr. Marten Postma

Spatial systems biology studying signal transduction and cell polarity regulation in microbial systems.

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EvoSysBio Lab

PI: Dr. Meike Wortel

Studying how microbial populations adapt and allocate resources, and how constraints shape growth, fitness and coexistence.

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Gumi Lab

PI: Dr. Jianbo Zhang

Developing experimental systems to probe microbiome interactions with epithelial tissues and immune players.

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Bacterial Cell Biology and Physiology (BCBP)

Cluster led by Prof. Leendert Hamoen that studies bacterial physiology, chromosome organisation and gene regulation, from fundamental mechanisms to infection biology and antimicrobial resistance.

Molecular Microbial Physiology Group

PI: Dr. Filipe Branco dos Santos

Quantitative microbial physiology and biotechnology, using systems and synthetic biology for strain development.

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DNA & RNA Interaction Lab

PI: Dr. Gaurav Dugar

RNA-centric microbiology, mapping DNA–RNA–protein interaction networks and non-canonical regulation in bacteria.

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Bacterial Cell Biology

PI: Prof. Dr. Leendert W. Hamoen

Fundamental bacterial cell biology and chromosome dynamics underpinning growth, stress responses and pathogenesis.

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Microbiome Engineering (ME)

Cluster led by Prof. Sahar El Aidy focusing on human and industrial microbiomes, engineering microbial communities and leveraging microbiome insights for health and biotechnology applications.

Microbiome Engineering Lab

PI: Prof. Dr. Sahar El Aidy

Human and industrial microbiome research and engineering, targeting health, food and biotechnology applications.

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Endowed Chairs

Endowed chairs that support food safety, industrial biotechnology, and microbiome research across all microbiology research pillars.

Peribiome Lab

PI: Prof. Dr. Ghislain R.L.J. Schyns

Peripheral microbiomes interactions with gut microbiomes and host, studying peribiome axes and their networks.

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Microbial Food Safety Chair

PI: Prof. Dr. Ir. Linda Verhoef

Endowed chair connecting microbial food safety research with regulatory practice and national policy.

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Mass Spectrometry Core Facility

State-of-the-art research infrastructure and expertise in mass spectrometry for proteomics, metabolomics, lipidomics and other advanced analytical techniques to support microbiology research across all themes.

Mass Spectrometry of Biomolecules

PI: Dr. Gertjan Kramer

Institute-wide mass spectrometry core, supporting microbial omics and quantitative biomolecular analysis.

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